Included Software

CloudyCluster comes with a good selection of open HPC libraries, tools and software.

Included HPC Software, Libraries and Tools


“Software / Libraries” Type CC 1.5.1 SW Version
.NET Core .Net Lib
Ambertools Molecular Dynamics 15
ANN Neural Net Lib
ATLAS Linear Algebra Lib
Biopython Bioinformatics Python Lib
BLAS Linear Algebra Lib
Blast Bioinformatics
Blender 3D Graphics 2.76
Boost Portable C++ Libs
Burrows-Wheeler Aligner Genomics
CESM Earth System Modeling 1.2.2
Cuda Toolkit GPU 9
Dakota Parallel OO Framework 6.4
Docker Containers
FFMPEG Video Processing
FFTW Discrete Fourier Transform Lib
FLTK Cross-Platform C++ GUI Toolkit
foam-extend Computational Fluid Dynamics 3.2
Galaxy Computational Biology 16.04
GATK Genome Toolkit 3.5
GCC Compiler
Gengetopt CL Option Tools
GRIB2 Data Format Lib
GROMACS Molecular Dynamics 5.0.5
GSL Scientific Library
Hadoop Map Reduce
HDF5 Data Format Lib
ImageMagick Image Processing
JasPer Infrastructure
Jupyter Interactive Computing Interface
LAMMPS Molecular Dynamics
matplotlib Python Plotting Lib
mlpack Machine Learning
mpich MPI
mxnet Machine Learning 0.9.3
NCAR Scientific Visualization
NCL Scientific Data Processing
NCO NetCDF operator toolkit
NetCDF Data Format Lib
NumPy Numerical Python Lib
nwchem Molecular dynamics 6.5
Octave Math Lib
OpenCV Computer Vision
OpenFoam Computational Fluid Dynamics 4
OpenFoam_esi Computational Fluid Dynamics 1606
OpenMPI MPI
OrangeFS Parallel Storage
Pandas Python Data Analysis Lib
papi Performance Monitoring API
paraview Scientific visualization 4.3.1
PICARD HTS Data Manipulation
PROJ coordinate transformation Lib
PyMOL Scientific visualization
Python + many standard libs Python
Quantum Espresso Nanoscale modeling 5.1
Queue Queue Lib
R (package) Language
Relion cryo-EM Lib 2.0.3
Rmpi R MPI Version
SaltStack System Util
SAMtools SAM Alignment Tools
scikit-learn Machine Learning
SciPy Scientific Python
Singularity Container Management
Slurm Scheduler
SU2 Computational Fluid Dynamics 4.2.0
SWIG C/C++ High Level Lang Lib
TensorFlow Machine Learning
theano Machine Learning
Torque Scheduler
UDUNITS Unit Coversion Lib
VTK Scientific visualization 7.0.0
WGRIB GRIB Manipulation Toolkit
WRF Weather Research